Documentation

Dragon AC, Senina I., Conchon A., Titaud O., Arrizabalaga H. and Lehodey P (revision submitted). Modeling spatial population dynamics of North Atlantic Albacore tuna under the influence of both fishing and climate variability. Canadian Journal of Fisheries and Aquatic Sciences.

Lehodey P., Conchon A, Senina I, Domokos R, Calmettes B, Jouanno J, Hernandez O, Kloser R. (Accepted). Optimization of a micronekton model with acoustic data. ICES Journal of Marine Sciences

Lehodey P., Senina I., Nicol S., Hampton J. (In press). Modelling the impact of climate change on South Pacific albacore tuna. Deep Sea Research.

Lambert C, Mannocci L, Lehodey P, Ridoux V (2014) Predicting Cetacean Habitats from Their Energetic Needs and the distribution of Their Prey in Two Contrasted Tropical Regions. PLoS ONE 9(8): e105958. doi:10.1371/journal.pone.0105958

Lehodey P., Senina I., Dragon A-C., Arrizabalaga H. (2014). Spatially explicit estimates of stock size, structure and biomass of North Atlantic albacore Tuna (Thunnus alalunga). Earth System Science Data Discussion, 7, 169–195.

Menkes C., Allain V. Rodier M., Gallois F., Lebourges-Dhaussy A., Hunt B., Smeti H., Pagano M., Josse E. Daroux A., Lehodey P., Senina I., Kestenare E., Lorrain A., and S. Nicol. (Accepted). Seasonal oceanography from physics to micronekton in a south-west Pacific ecosystem. Deep Sea Research

Hernandez O., Lehodey P., Senina I., Echevin V., Ayon P., Bertrand A., Gaspar P., (2014). Understanding mechanisms that control fish spawning and larval recruitment: Parameter optimization of an Eulerian model (SEAPODYM-SP) with Peruvian anchovy and sardine eggs and larvae data. Progress in Oceanography 123, 105-122.

Abecassis M, Senina I, Lehodey P, Gaspar P, Parker D, et al. (2013) A Model of Loggerhead Sea Turtle (Caretta caretta) Habitat and Movement in the Oceanic North Pacific. PLoS ONE 8(9): e73274. doi:10.1371/journal.pone.0073274

Bell JD, Ganachaud A., Gehrke PC, Griffiths SP, Hobday AJ, Hoegh-Guldberg O, Johnson, JE Le Borgne R, Lehodey P, Lough JM, Matear RJ, Pickering TD, Pratchett MS, Sen Gupta A, Senina I and Waycott M., (2013) Tropical Pacific fisheries and aquaculture will respond differently to climate change. Nature Climate Change, 3: 591–599.

Lehodey P., Senina I., Calmettes B, Hampton J, Nicol S. (2013). Modelling the impact of climate change on Pacific skipjack tuna population and fisheries. Climatic Change, DOI 10.1007/s10584-012-0595-1, 119 (1): 95-109.

Sibert J, Senina I, Lehodey P, Hampton J (2012). Shifting from marine reserves to maritime zoning for conservation of Pacific bigeye tuna (Thunnus obesus). Proceedings of the National Academy of Sciences 109(44): 18221-18225.

Briand K., Molony B., Lehodey P. (2011). A study on the variability of albacore (Thunnus alalunga) longline catch rates in the south-west Pacific Ocean. Fisheries Oceanography. 20: 517–529

Lehodey P., Senina I., Sibert J., Bopp L, Calmettes B., Hampton J., Murtugudde R. (2010). Preliminary forecasts of population trends for Pacific bigeye tuna under the A2 IPCC scenario. Progress in Oceanography. 86: 302–315

Lehodey P., Murtugudde R., Senina I. (2010). Bridging the gap from ocean models to population dynamics of large marine predators: a model of mid-trophic functional groups. Progress in Oceanography, 84: 69–84

Lehodey P., Senina I., Murtugudde R. (2008). A Spatial Ecosystem And Populations Dynamics Model (SEAPODYM) - Modelling of tuna and tuna-like populations. Progress in Oceanography, 78: 304-318.

Senina I., Sibert J., Lehodey P. (2008). Parameter estimation for basin-scale ecosystem-linked population models of large pelagic predators: application to skipjack tuna. Progress in Oceanography, 78: 319-335.

Lehodey P., Chai F., Hampton J. (2003). Modelling climate-related variability of tuna populations from a coupled ocean-biogeochemical-populations dynamics model. Fisheries Oceanography, 12(4): 483-494

Loukos H., Monfray P., Bopp L., Lehodey P. (2003). Potential changes in skipjack tuna habitat from a global warming scenario: modeling approach and preliminary results. Fisheries Oceanography, 12(4): 474-482

Lehodey P., (2001). The pelagic ecosystem of the tropical Pacific Ocean: dynamic spatial modelling and biological consequences of ENSO. Progress in Oceanography, 49: 439-468

Bertignac M., Lehodey P., Hampton J., (1998). A spatial population dynamics simulation model of tropical tunas using a habitat index based on environmental parameters. Fisheries Oceanography, 7: 326-334

Lehodey P., André J-M., Bertignac M., Hampton J., Stoens A., C. Menkès, L., Memery, Grima N., (1998). Predicting skipjack tuna forage distributions in the Equatorial Pacific using a coupled dynamical bio-geochemical model. Fisheries Oceanography, 7: 317-325

Lehodey P., Senina I., Titaud O., Calmettes B., Conchon A., Dragon A-C., Nicol S., Caillot S., Hampton J, Williams P. (2014). Project 62: SEAPODYM applications in WCPO. 10th regular session of the Scientific Steering Committee, 6-14 August 2014, Majuro,Republic of the Marshall islands. WCPFC-SC10-2014/EB-WP-02 Rev 1.

Lehodey P, Senina I, Dragon A-C, Arrizabalaga H. (2013). Modeling activities conducted under EURO-BASIN research project to develop SEAPODYM to the North Atlantic albacore tuna (Thunnus alalunga) ICCAT, Document SCRS/2013/ 125: 26 pp.

Lehodey P., Senina I., Titaud O., Calmettes B., Nicol S., Hampton J, Caillot S., Williams P. (2013). Project 62: SEAPODYM applications in WCPO. 9th regular session of the Scientific Steering Committee, 6-14 August 2013, Pohnpei, Federated States of Micronesia. WCPFC‐SC9‐2012/EB‐WP‐03 Rev 1.

Lehodey, P., Senina, I., Hampton, J, Nicol, S, Williams, P., Jurado Molina J., Abecassis, M., Polovina J. (2012) Project 62: SEAPODYM working progress and applications to Pacific tuna and billfish populations and fisheries. 8th regular session of the Scientific Steering Committee, 7-15 August 2012, Busan, Korea. WCPFC-SC8-2012/EB-IP-06.

Lehodey P., Senina I., Calmettes B., Hampton J., Nicol S., Williams P., Jurado Molina J., Ogura M., Kiyofuji H., Okamoto S. (2011). SEAPODYM working progress and applications to Pacific skipjack tuna population and fisheries. 7th regular session of the Scientific Steering Committee, 8-17 August 2011, Pohnpei, Federate States of Micronesia. WCPFC-SC7-2011/EB- WP 06.

Sibert J., Senina I., Lehodey P. (2011). Prospects for effective conservation of bigeye tuna stocks in the Western Central Pacific Ocean. 7th regular session of the Scientific Steering Committee, 8-17 August 2011, Pohnpei, Federate States of Micronesia. WCPFC-SC7-2011/EB- WP 06.

Lehodey P., Senina I., Calmettes B., Abecassis M., Jurado Molina J., Briand K., Hampton J., Polovina J., Williams P., Nicol S. (2010). Project 62: SEAPODYM applications in WCPO – Progress Report. 6th regular session of the Scientific Steering Committee, 10-19 August 2010, Nukualofa, Tonga. WCPFC-SC6-2010/EB- IP 02.

Lehodey, P., Senina, I., Calmettes, B., Royer, F., Gaspar, P., Abécassis, M., Polovina, J., Parker, D., Domokos, R., Hernandez, O., Dessert, M., Kloser, R., Young, J., Lutcavage, M., Handegard, N.O., Hampton, J. (2010). Towards Operational Management of Pelagic Ecosystems. ICES CM Documents 2010, 20-24 Sep., Nantes, France. 13 pp. (Best Conference Scientific Paper award). ISBN 978-87-7482-085-7.

Lehodey P., Senina I., (2009). A user manual for SEAPODYM version 2.0: application with data assimilation. Fifth regular session of the Scientific Committee of the Western and Central Pacific Fisheries Commission, 10–21 August 2009, Port Vila, Vanuatu, WCPFC-SC5-2009/ EB-IP-13, 82 pp.

Lehodey P., Senina I., (2009). An update of recent developments and applications of the SEAPODYM model. Fifth regular session of the Scientific Committee of the Western and Central Pacific Fisheries Commission, 10–21 August 2009, Port Vila, Vanuatu, WCPFC-SC5-2009/EB-WP-10, 44 pp.

Lehodey P., Senina, I., Royer, F., Jouanno, J., Sibert, J., Lutcavage, M., Gaspar, P., & Fromentin, J-M. (2009). Parameter estimation of habitat driven spatial dynamics of Atlantic bluefin tuna with tagging data. GLOBEC Newsletter 15 (1): 17-19

Lehodey P., Senina I., Sibert J., Hampton J. (2008). SEAPODYM.v2: A Spatial Ecosystem And Population Dynamics Model with parameter optimization providing a new tool for tuna management. Fourth regular session of the Scientific Committee of the Western and Central Pacific Fisheries Commission, 11–22 August 2008, Port Moresby, Papua New Guinea. WCPFC-SC4-2008/EB-WP-10: 15 pp.

Lehodey P., (2006). Reference manual for the Spatial Ecosystem and Populations Dynamics Model SEAPODYM : 58 pp.

Senina I.N., Sibert J.R., Lehodey P., (2005). SEAPODYM on a mixed-resolution spatial scale. First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. ME-WP-2.

Lehodey P., (2005a). Reference manual for the Spatial Ecosystem And Populations Dynamics Model SEAPODYM. First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. ME IP–1: 54 pp.

Lehodey P., (2005b). Application of SEAPODYM to the Pacific Pelagic Ecosystem. Recent results and perspectives. First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. EB WP–8: 29pp.

Lehodey P., (2005c). First application of SEAPODYM to Pacific bigeye tuna. First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. ME-WP-1

Lehodey P., (2004a). A Spatial Ecosystem And Populations Dynamics Model (SEAPODYM) for tuna and associated oceanic top-predator species: Part I – Lower and intermediate trophic components. 17th meeting of the Standing Committee on Tuna and Billfish, Majuro, Republic of Marshall Islands, 9-18 Aug. 2004, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: ECO-1: 26 pp.

Lehodey P., (2004b) A Spatial Ecosystem And Populations Dynamics Model (SEAPODYM) for tuna and associated oceanic top-predator species: Part II – Tuna populations and fisheries. 17th meeting of the Standing Committee on Tuna and Billfish, Majuro, Republic of Marshall Islands, 9-18 Aug. 2004, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: ECO-2: 36 pp.

Lehodey P., (2003) SEPODYM application to skipjack tuna (Katsuwonus pelamis) in the Pacific Ocean: impact of ENSO on recruitment and population. 16th meeting of the Standing Committee on Tuna and Billfish, Mooloolaba, Queensland, Australia, 9-16 July 2003, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: SKJ-5

Lehodey P., (2003) First application of SEPODYM to yellowfin tuna population and fisheries in the Pacific Ocean. 16th meeting of the Standing Committee on Tuna and Billfish, Mooloolaba, Queensland, Australia, 9-16 July 2003, Oceanic Fisheries Programme, Secretariat of the Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: YFT-4

Lehodey P., (2003) SEPODYM application to albacore (Thunnus alalunga) in the Pacific Ocean. 16th meeting of the Standing Committee on Tuna and Billfish, Mooloolaba, Queensland, Australia, 9-16 July 2003, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: ALB-9

Lehodey, P. 2000. Impacts of the El Niño Southern Oscillation on tuna populations and fisheries in the tropical Pacific Ocean. 13th Standing Committee on Tuna and Billfish, Noumea, 5-12 July 2000, Secretariat of the Pacific Community, Noumea, Working Paper RG-1: 32 pp.

Lehodey, P. 2000. Update on the Spatial Environmental Population Dynamics Model: SEPODYM. 13th Standing Committee on Tuna and Billfish, Noumea, 5-12 July 2000, Secretariat of the Pacific Community, Noumea, Working Paper RG-2: 6 pp.

Lehodey P., (2002) SEPODYM development and application to skipjack population and fisheries. 15th meeting of the Standing Committee on Tuna and Billfish, Honolulu, Hawaii, USA, 22-27 July 2002, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: SKJ-5

Lehodey, P. 2001. Sepodym skipjack analysis. 14th Standing Committee on Tuna and Billfish, Noumea, 9-16 August 2000, Secretariat of the Pacific Community, Noumea, Working Paper SKJ-2: 24 pp.